BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= ACGAAACCAAGGTGGCTATG (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034579321|ref|XM_017019251.1| PREDICTED: Homo sapiens heter... 40.1 0.002
gi|530400150|ref|XR_245923.1| PREDICTED: Homo sapiens heterogen... 40.1 0.002
gi|530400151|ref|XM_005268826.1| PREDICTED: Homo sapiens hetero... 40.1 0.002
gi|994318938|ref|NM_002136.3| Homo sapiens heterogeneous nuclea... 40.1 0.002
gi|994318937|ref|NM_031157.3| Homo sapiens heterogeneous nuclea... 40.1 0.002
gi|994321657|ref|NR_135167.1| Homo sapiens heterogeneous nuclea... 40.1 0.002
gi|732170465|ref|NM_021156.3| Homo sapiens thioredoxin related ... 34.2 0.12
gi|58761497|ref|NM_001011725.1| Homo sapiens heterogeneous nucl... 34.2 0.12
gi|58761495|ref|NM_001011724.1| Homo sapiens heterogeneous nucl... 34.2 0.12
gi|119943148|ref|NR_003277.1| Homo sapiens heterogeneous nuclea... 34.2 0.12
gi|296080701|ref|NM_004134.6| Homo sapiens heat shock protein f... 32.2 0.47
gi|1034691846|ref|XR_942588.2| PREDICTED: Homo sapiens uncharac... 30.2 1.9
gi|1034584323|ref|XM_006719946.3| PREDICTED: Homo sapiens G pro... 30.2 1.9
gi|1034637909|ref|XR_924718.2| PREDICTED: Homo sapiens uncharac... 30.2 1.9
gi|538260581|ref|NM_001282380.1| Homo sapiens actin-related pro... 28.2 7.3
gi|538260580|ref|NM_182616.3| Homo sapiens actin-related protei... 28.2 7.3
gi|356461014|ref|NM_015465.4| Homo sapiens gem nuclear organell... 28.2 7.3
gi|356461015|ref|NM_001252156.1| Homo sapiens gem nuclear organ... 28.2 7.3
gi|325651835|ref|NM_003601.3| Homo sapiens SWI/SNF related, mat... 28.2 7.3
gi|1034636496|ref|XM_017007509.1| PREDICTED: Homo sapiens splA/... 28.2 7.3
gi|312147328|ref|NM_001198952.1| Homo sapiens ring finger prote... 28.2 7.3
gi|1034699111|ref|XR_959034.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034689595|ref|XR_926239.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|767959569|ref|XR_930457.1| PREDICTED: Homo sapiens uncharact... 28.2 7.3
gi|585420406|ref|NM_001289987.1| Homo sapiens filamin A interac... 28.2 7.3
gi|585420408|ref|NM_015687.3| Homo sapiens filamin A interactin... 28.2 7.3
gi|664805972|ref|NM_001300866.1| Homo sapiens filamin A interac... 28.2 7.3
gi|1034649875|ref|XM_005248713.3| PREDICTED: Homo sapiens filam... 28.2 7.3
gi|1034649876|ref|XM_005248715.4| PREDICTED: Homo sapiens filam... 28.2 7.3
gi|1034618218|ref|XR_940320.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
> gi|1034579321|ref|XM_017019251.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript
variant X3, mRNA
Length=1702
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ACGAAACCAAGGTGGCTATG 20
||||||||||||||||||||
Sbjct 934 ACGAAACCAAGGTGGCTATG 953
> gi|530400150|ref|XR_245923.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript variant
X1, misc_RNA
Length=1441
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ACGAAACCAAGGTGGCTATG 20
||||||||||||||||||||
Sbjct 1165 ACGAAACCAAGGTGGCTATG 1184
> gi|530400151|ref|XM_005268826.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript
variant X2, mRNA
Length=1661
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ACGAAACCAAGGTGGCTATG 20
||||||||||||||||||||
Sbjct 1165 ACGAAACCAAGGTGGCTATG 1184
> gi|994318938|ref|NM_002136.3| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 1, mRNA
Length=1799
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ACGAAACCAAGGTGGCTATG 20
||||||||||||||||||||
Sbjct 1015 ACGAAACCAAGGTGGCTATG 1034
> gi|994318937|ref|NM_031157.3| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 2, mRNA
Length=1955
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ACGAAACCAAGGTGGCTATG 20
||||||||||||||||||||
Sbjct 1171 ACGAAACCAAGGTGGCTATG 1190
> gi|994321657|ref|NR_135167.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 3, non-coding
RNA
Length=1324
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ACGAAACCAAGGTGGCTATG 20
||||||||||||||||||||
Sbjct 1015 ACGAAACCAAGGTGGCTATG 1034
> gi|732170465|ref|NM_021156.3| Homo sapiens thioredoxin related
transmembrane protein 4 (TMX4), mRNA
Length=6164
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 4 AAACCAAGGTGGCTATG 20
|||||||||||||||||
Sbjct 811 AAACCAAGGTGGCTATG 795
> gi|58761497|ref|NM_001011725.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1-like 2 (HNRNPA1L2), transcript variant
2, mRNA
Length=2224
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 4 AAACCAAGGTGGCTATG 20
|||||||||||||||||
Sbjct 1832 AAACCAAGGTGGCTATG 1848
> gi|58761495|ref|NM_001011724.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1-like 2 (HNRNPA1L2), transcript variant
1, mRNA
Length=2365
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 4 AAACCAAGGTGGCTATG 20
|||||||||||||||||
Sbjct 1973 AAACCAAGGTGGCTATG 1989
> gi|119943148|ref|NR_003277.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 pseudogene 33 (HNRNPA1P33), non-coding
RNA
Length=542
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 3 GAAACCAAGGTGGCTAT 19
|||||||||||||||||
Sbjct 441 GAAACCAAGGTGGCTAT 457
> gi|296080701|ref|NM_004134.6| Homo sapiens heat shock protein
family A (Hsp70) member 9 (HSPA9), mRNA
Length=3506
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 4 AAACCAAGGTGGCTAT 19
||||||||||||||||
Sbjct 3359 AAACCAAGGTGGCTAT 3374
> gi|1034691846|ref|XR_942588.2| PREDICTED: Homo sapiens uncharacterized
LOC105374217 (LOC105374217), ncRNA
Length=4139
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GAAACCAAGGTGGCT 17
|||||||||||||||
Sbjct 3459 GAAACCAAGGTGGCT 3473
> gi|1034584323|ref|XM_006719946.3| PREDICTED: Homo sapiens G protein-coupled
receptor 18 (GPR18), transcript variant X1, mRNA
Length=2471
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 ACCAAGGTGGCTATG 20
|||||||||||||||
Sbjct 360 ACCAAGGTGGCTATG 374
> gi|1034637909|ref|XR_924718.2| PREDICTED: Homo sapiens uncharacterized
LOC105374217 (LOC105374217), ncRNA
Length=4139
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GAAACCAAGGTGGCT 17
|||||||||||||||
Sbjct 3459 GAAACCAAGGTGGCT 3473
> gi|538260581|ref|NM_001282380.1| Homo sapiens actin-related protein
2/3 complex inhibitor (ARPIN), transcript variant 2,
mRNA
Length=6503
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 CCAAGGTGGCTATG 20
||||||||||||||
Sbjct 1358 CCAAGGTGGCTATG 1345
> gi|538260580|ref|NM_182616.3| Homo sapiens actin-related protein
2/3 complex inhibitor (ARPIN), transcript variant 1, mRNA
Length=6114
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 CCAAGGTGGCTATG 20
||||||||||||||
Sbjct 969 CCAAGGTGGCTATG 956
> gi|356461014|ref|NM_015465.4| Homo sapiens gem nuclear organelle
associated protein 5 (GEMIN5), transcript variant 1, mRNA
Length=5404
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 CCAAGGTGGCTATG 20
||||||||||||||
Sbjct 1191 CCAAGGTGGCTATG 1178
> gi|356461015|ref|NM_001252156.1| Homo sapiens gem nuclear organelle
associated protein 5 (GEMIN5), transcript variant 2,
mRNA
Length=5401
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 CCAAGGTGGCTATG 20
||||||||||||||
Sbjct 1188 CCAAGGTGGCTATG 1175
> gi|325651835|ref|NM_003601.3| Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily
a, member 5 (SMARCA5), mRNA
Length=7926
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 ACGAAACCAAGGTGGCTA 18
|||| |||||||||||||
Sbjct 5612 ACGATACCAAGGTGGCTA 5595
> gi|1034636496|ref|XM_017007509.1| PREDICTED: Homo sapiens splA/ryanodine
receptor domain and SOCS box containing 4 (SPSB4),
transcript variant X1, mRNA
Length=15118
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 GAAACCAAGGTGGC 16
||||||||||||||
Sbjct 4943 GAAACCAAGGTGGC 4930
> gi|312147328|ref|NM_001198952.1| Homo sapiens ring finger protein
103 (RNF103), transcript variant 3, mRNA
Length=2970
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 AAACCAAGGTGGCT 17
||||||||||||||
Sbjct 1551 AAACCAAGGTGGCT 1538
> gi|1034699111|ref|XR_959034.2| PREDICTED: Homo sapiens uncharacterized
LOC105376328 (LOC105376328), transcript variant X2,
ncRNA
Length=2081
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 GAAACCAAGGTGGC 16
||||||||||||||
Sbjct 1028 GAAACCAAGGTGGC 1041
> gi|1034689595|ref|XR_926239.2| PREDICTED: Homo sapiens uncharacterized
LOC105374845 (LOC105374845), transcript variant X2,
ncRNA
Length=1881
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AAACCAAGGTGGCT 17
||||||||||||||
Sbjct 935 AAACCAAGGTGGCT 948
> gi|767959569|ref|XR_930457.1| PREDICTED: Homo sapiens uncharacterized
LOC105376328 (LOC105376328), transcript variant X1,
ncRNA
Length=1532
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 GAAACCAAGGTGGC 16
||||||||||||||
Sbjct 1028 GAAACCAAGGTGGC 1041
> gi|585420406|ref|NM_001289987.1| Homo sapiens filamin A interacting
protein 1 (FILIP1), transcript variant 1, mRNA
Length=4856
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CGAAACCAAGGTGG 15
||||||||||||||
Sbjct 598 CGAAACCAAGGTGG 611
> gi|585420408|ref|NM_015687.3| Homo sapiens filamin A interacting
protein 1 (FILIP1), transcript variant 2, mRNA
Length=4690
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CGAAACCAAGGTGG 15
||||||||||||||
Sbjct 432 CGAAACCAAGGTGG 445
> gi|664805972|ref|NM_001300866.1| Homo sapiens filamin A interacting
protein 1 (FILIP1), transcript variant 4, mRNA
Length=3999
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CGAAACCAAGGTGG 15
||||||||||||||
Sbjct 432 CGAAACCAAGGTGG 445
> gi|1034649875|ref|XM_005248713.3| PREDICTED: Homo sapiens filamin
A interacting protein 1 (FILIP1), transcript variant X1,
mRNA
Length=5108
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CGAAACCAAGGTGG 15
||||||||||||||
Sbjct 403 CGAAACCAAGGTGG 416
> gi|1034649876|ref|XM_005248715.4| PREDICTED: Homo sapiens filamin
A interacting protein 1 (FILIP1), transcript variant X2,
mRNA
Length=4884
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 CGAAACCAAGGTGG 15
||||||||||||||
Sbjct 403 CGAAACCAAGGTGG 416
> gi|1034618218|ref|XR_940320.2| PREDICTED: Homo sapiens uncharacterized
LOC105374845 (LOC105374845), transcript variant X1,
ncRNA
Length=2025
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AAACCAAGGTGGCT 17
||||||||||||||
Sbjct 1079 AAACCAAGGTGGCT 1092
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2