BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AATTGGGCAAATGTGTTCAGC (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|767990948|ref|XM_011523488.1| PREDICTED: Homo sapiens cadher... 42.1 6e-04
gi|767990950|ref|XM_011523489.1| PREDICTED: Homo sapiens cadher... 42.1 6e-04
gi|953768347|ref|NM_001317184.1| Homo sapiens cadherin 1 (CDH1)... 42.1 6e-04
gi|953768351|ref|NM_001317186.1| Homo sapiens cadherin 1 (CDH1)... 42.1 6e-04
gi|953768346|ref|NM_004360.4| Homo sapiens cadherin 1 (CDH1), t... 42.1 6e-04
gi|953768349|ref|NM_001317185.1| Homo sapiens cadherin 1 (CDH1)... 42.1 6e-04
gi|1034679328|ref|XR_001735362.1| PREDICTED: Homo sapiens uncha... 32.2 0.59
gi|1034584513|ref|XM_017020619.1| PREDICTED: Homo sapiens proto... 32.2 0.59
gi|223671938|ref|NM_203487.2| Homo sapiens protocadherin 9 (PCD... 32.2 0.59
gi|971460832|ref|NM_001318372.1| Homo sapiens protocadherin 9 (... 32.2 0.59
gi|223671937|ref|NM_020403.4| Homo sapiens protocadherin 9 (PCD... 32.2 0.59
gi|971460841|ref|NM_001318373.1| Homo sapiens protocadherin 9 (... 32.2 0.59
gi|1034619796|ref|XR_001739886.1| PREDICTED: Homo sapiens uncha... 32.2 0.59
gi|1034565600|ref|XR_001738431.1| PREDICTED: Homo sapiens uncha... 32.2 0.59
gi|1034690589|ref|XR_001736287.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034685423|ref|XR_917471.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034676785|ref|XR_951712.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034627845|ref|XR_001754991.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034624502|ref|XM_017027717.1| PREDICTED: Homo sapiens eryth... 28.2 9.2
gi|385251396|ref|NM_001258329.1| Homo sapiens erythrocyte membr... 28.2 9.2
gi|1034597287|ref|XR_933743.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|902967470|ref|NM_001311160.1| Homo sapiens Thy-1 cell surfac... 28.2 9.2
gi|902967469|ref|NM_006288.4| Homo sapiens Thy-1 cell surface a... 28.2 9.2
gi|902967472|ref|NM_001311162.1| Homo sapiens Thy-1 cell surfac... 28.2 9.2
gi|387849277|ref|NR_049725.1| Homo sapiens NAV2 antisense RNA 5... 28.2 9.2
gi|1034574548|ref|XM_017018013.1| PREDICTED: Homo sapiens chrom... 28.2 9.2
gi|149158710|ref|NM_020643.2| Homo sapiens chromosome 11 open r... 28.2 9.2
gi|571026726|ref|NR_110138.1| Homo sapiens prostate cancer asso... 28.2 9.2
gi|1034656415|ref|XM_017012475.1| PREDICTED: Homo sapiens prote... 28.2 9.2
gi|1034615604|ref|XM_017004619.1| PREDICTED: Homo sapiens NLR f... 28.2 9.2
gi|1034615606|ref|XR_001738872.1| PREDICTED: Homo sapiens NLR f... 28.2 9.2
gi|312433959|ref|NM_001199138.1| Homo sapiens NLR family, CARD ... 28.2 9.2
gi|312433961|ref|NM_001199139.1| Homo sapiens NLR family, CARD ... 28.2 9.2
gi|312433958|ref|NM_021209.4| Homo sapiens NLR family, CARD dom... 28.2 9.2
> gi|767990948|ref|XM_011523488.1| PREDICTED: Homo sapiens cadherin
1 (CDH1), transcript variant X1, mRNA
Length=4682
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGTGTTCAGC 21
|||||||||||||||||||||
Sbjct 4230 AATTGGGCAAATGTGTTCAGC 4210
> gi|767990950|ref|XM_011523489.1| PREDICTED: Homo sapiens cadherin
1 (CDH1), transcript variant X2, mRNA
Length=4969
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGTGTTCAGC 21
|||||||||||||||||||||
Sbjct 4517 AATTGGGCAAATGTGTTCAGC 4497
> gi|953768347|ref|NM_001317184.1| Homo sapiens cadherin 1 (CDH1),
transcript variant 2, mRNA
Length=4662
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGTGTTCAGC 21
|||||||||||||||||||||
Sbjct 4183 AATTGGGCAAATGTGTTCAGC 4163
> gi|953768351|ref|NM_001317186.1| Homo sapiens cadherin 1 (CDH1),
transcript variant 4, mRNA
Length=4699
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGTGTTCAGC 21
|||||||||||||||||||||
Sbjct 4220 AATTGGGCAAATGTGTTCAGC 4200
> gi|953768346|ref|NM_004360.4| Homo sapiens cadherin 1 (CDH1),
transcript variant 1, mRNA
Length=4845
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGTGTTCAGC 21
|||||||||||||||||||||
Sbjct 4366 AATTGGGCAAATGTGTTCAGC 4346
> gi|953768349|ref|NM_001317185.1| Homo sapiens cadherin 1 (CDH1),
transcript variant 3, mRNA
Length=4912
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGTGTTCAGC 21
|||||||||||||||||||||
Sbjct 4433 AATTGGGCAAATGTGTTCAGC 4413
> gi|1034679328|ref|XR_001735362.1| PREDICTED: Homo sapiens uncharacterized
LOC105372891 (LOC105372891), transcript variant
X1, ncRNA
Length=7168
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGTGT 16
||||||||||||||||
Sbjct 4305 AATTGGGCAAATGTGT 4290
> gi|1034584513|ref|XM_017020619.1| PREDICTED: Homo sapiens protocadherin
9 (PCDH9), transcript variant X1, mRNA
Length=5995
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 AATTGGGCAAATGTGT 16
||||||||||||||||
Sbjct 5237 AATTGGGCAAATGTGT 5252
> gi|223671938|ref|NM_203487.2| Homo sapiens protocadherin 9 (PCDH9),
transcript variant 1, mRNA
Length=6234
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 AATTGGGCAAATGTGT 16
||||||||||||||||
Sbjct 5469 AATTGGGCAAATGTGT 5484
> gi|971460832|ref|NM_001318372.1| Homo sapiens protocadherin 9
(PCDH9), transcript variant 3, mRNA
Length=6108
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 AATTGGGCAAATGTGT 16
||||||||||||||||
Sbjct 5343 AATTGGGCAAATGTGT 5358
> gi|223671937|ref|NM_020403.4| Homo sapiens protocadherin 9 (PCDH9),
transcript variant 2, mRNA
Length=6132
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 AATTGGGCAAATGTGT 16
||||||||||||||||
Sbjct 5367 AATTGGGCAAATGTGT 5382
> gi|971460841|ref|NM_001318373.1| Homo sapiens protocadherin 9
(PCDH9), transcript variant 4, mRNA
Length=6006
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 AATTGGGCAAATGTGT 16
||||||||||||||||
Sbjct 5241 AATTGGGCAAATGTGT 5256
> gi|1034619796|ref|XR_001739886.1| PREDICTED: Homo sapiens uncharacterized
LOC107984111 (LOC107984111), ncRNA
Length=1203
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 AATTGGGCAAATGTGT 16
||||||||||||||||
Sbjct 169 AATTGGGCAAATGTGT 184
> gi|1034565600|ref|XR_001738431.1| PREDICTED: Homo sapiens uncharacterized
LOC105372891 (LOC105372891), transcript variant
X1, ncRNA
Length=7168
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGTGT 16
||||||||||||||||
Sbjct 4305 AATTGGGCAAATGTGT 4290
> gi|1034690589|ref|XR_001736287.1| PREDICTED: Homo sapiens uncharacterized
LOC105372762 (LOC105372762), transcript variant
X2, ncRNA
Length=2982
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 AATTGGGCAAATGT 14
||||||||||||||
Sbjct 1872 AATTGGGCAAATGT 1885
> gi|1034685423|ref|XR_917471.2| PREDICTED: Homo sapiens uncharacterized
LOC105371345 (LOC105371345), transcript variant X2,
ncRNA
Length=1547
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAAATGTGTTCAG 20
||||||||||||||
Sbjct 459 GCAAATGTGTTCAG 472
> gi|1034676785|ref|XR_951712.2| PREDICTED: Homo sapiens uncharacterized
LOC105379583 (LOC105379583), ncRNA
Length=1720
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TGGGCAAATGTGTT 17
||||||||||||||
Sbjct 206 TGGGCAAATGTGTT 219
> gi|1034627845|ref|XR_001754991.1| PREDICTED: Homo sapiens uncharacterized
LOC105372762 (LOC105372762), transcript variant
X2, ncRNA
Length=2982
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 AATTGGGCAAATGT 14
||||||||||||||
Sbjct 1872 AATTGGGCAAATGT 1885
> gi|1034624502|ref|XM_017027717.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 1 (EPB41L1), transcript
variant X14, mRNA
Length=6264
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TTGGGCAAATGTGT 16
||||||||||||||
Sbjct 115 TTGGGCAAATGTGT 128
> gi|385251396|ref|NM_001258329.1| Homo sapiens erythrocyte membrane
protein band 4.1 like 1 (EPB41L1), transcript variant
3, mRNA
Length=6327
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TTGGGCAAATGTGT 16
||||||||||||||
Sbjct 178 TTGGGCAAATGTGT 191
> gi|1034597287|ref|XR_933743.2| PREDICTED: Homo sapiens uncharacterized
LOC105371345 (LOC105371345), transcript variant X2,
ncRNA
Length=1547
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 GCAAATGTGTTCAG 20
||||||||||||||
Sbjct 459 GCAAATGTGTTCAG 472
> gi|902967470|ref|NM_001311160.1| Homo sapiens Thy-1 cell surface
antigen (THY1), transcript variant 2, mRNA
Length=2944
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TTGGGCAAATGTGT 16
||||||||||||||
Sbjct 2899 TTGGGCAAATGTGT 2886
> gi|902967469|ref|NM_006288.4| Homo sapiens Thy-1 cell surface
antigen (THY1), transcript variant 1, mRNA
Length=3008
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TTGGGCAAATGTGT 16
||||||||||||||
Sbjct 2963 TTGGGCAAATGTGT 2950
> gi|902967472|ref|NM_001311162.1| Homo sapiens Thy-1 cell surface
antigen (THY1), transcript variant 3, mRNA
Length=2080
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TTGGGCAAATGTGT 16
||||||||||||||
Sbjct 2035 TTGGGCAAATGTGT 2022
> gi|387849277|ref|NR_049725.1| Homo sapiens NAV2 antisense RNA
5 (NAV2-AS5), long non-coding RNA
Length=3336
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TTGGGCAAATGTGT 16
||||||||||||||
Sbjct 2614 TTGGGCAAATGTGT 2601
> gi|1034574548|ref|XM_017018013.1| PREDICTED: Homo sapiens chromosome
11 open reading frame 16 (C11orf16), transcript variant
X1, mRNA
Length=2386
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TTGGGCAAATGTGT 16
||||||||||||||
Sbjct 2285 TTGGGCAAATGTGT 2298
> gi|149158710|ref|NM_020643.2| Homo sapiens chromosome 11 open
reading frame 16 (C11orf16), mRNA
Length=1942
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TTGGGCAAATGTGT 16
||||||||||||||
Sbjct 1824 TTGGGCAAATGTGT 1837
> gi|571026726|ref|NR_110138.1| Homo sapiens prostate cancer associated
transcript 5 (non-protein coding) (PCAT5), long non-coding
RNA
Length=3550
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 GCAAATGTGTTCAG 20
||||||||||||||
Sbjct 2517 GCAAATGTGTTCAG 2504
> gi|1034656415|ref|XM_017012475.1| PREDICTED: Homo sapiens protein
tyrosine phosphatase, receptor type N2 (PTPRN2), transcript
variant X1, mRNA
Length=4844
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TGGGCAAATGTGTT 17
||||||||||||||
Sbjct 115 TGGGCAAATGTGTT 128
> gi|1034615604|ref|XM_017004619.1| PREDICTED: Homo sapiens NLR
family, CARD domain containing 4 (NLRC4), transcript variant
X1, mRNA
Length=2713
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGT 14
||||||||||||||
Sbjct 2074 AATTGGGCAAATGT 2061
> gi|1034615606|ref|XR_001738872.1| PREDICTED: Homo sapiens NLR
family, CARD domain containing 4 (NLRC4), transcript variant
X2, misc_RNA
Length=3073
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGT 14
||||||||||||||
Sbjct 2074 AATTGGGCAAATGT 2061
> gi|312433959|ref|NM_001199138.1| Homo sapiens NLR family, CARD
domain containing 4 (NLRC4), transcript variant 2, mRNA
Length=3371
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGT 14
||||||||||||||
Sbjct 2074 AATTGGGCAAATGT 2061
> gi|312433961|ref|NM_001199139.1| Homo sapiens NLR family, CARD
domain containing 4 (NLRC4), transcript variant 3, mRNA
Length=3254
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGT 14
||||||||||||||
Sbjct 1957 AATTGGGCAAATGT 1944
> gi|312433958|ref|NM_021209.4| Homo sapiens NLR family, CARD domain
containing 4 (NLRC4), transcript variant 1, mRNA
Length=3385
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AATTGGGCAAATGT 14
||||||||||||||
Sbjct 2088 AATTGGGCAAATGT 2075
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2