BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AATTGCTAGTTTACCGTTCAGAAG (evalue = 10)
Length=24
Score E
Sequences producing significant alignments: (Bits) Value
gi|973353087|ref|NM_212482.2| Homo sapiens fibronectin 1 (FN1),... 48.1 2e-05
gi|973353088|ref|NM_002026.3| Homo sapiens fibronectin 1 (FN1),... 48.1 2e-05
gi|973353089|ref|NM_212478.2| Homo sapiens fibronectin 1 (FN1),... 48.1 2e-05
gi|973353090|ref|NM_212476.2| Homo sapiens fibronectin 1 (FN1),... 48.1 2e-05
gi|973353091|ref|NM_212474.2| Homo sapiens fibronectin 1 (FN1),... 48.1 2e-05
gi|807066341|ref|NM_001306129.1| Homo sapiens fibronectin 1 (FN... 48.1 2e-05
gi|807066343|ref|NM_001306130.1| Homo sapiens fibronectin 1 (FN... 48.1 2e-05
gi|807066345|ref|NM_001306131.1| Homo sapiens fibronectin 1 (FN... 48.1 2e-05
gi|807066347|ref|NM_001306132.1| Homo sapiens fibronectin 1 (FN... 48.1 2e-05
gi|1034580326|ref|XM_017019551.1| PREDICTED: Homo sapiens adapt... 30.2 3.7
gi|1034580325|ref|XM_011538530.2| PREDICTED: Homo sapiens adapt... 30.2 3.7
> gi|973353087|ref|NM_212482.2| Homo sapiens fibronectin 1 (FN1),
transcript variant 1, mRNA
Length=8833
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AATTGCTAGTTTACCGTTCAGAAG 24
||||||||||||||||||||||||
Sbjct 8639 AATTGCTAGTTTACCGTTCAGAAG 8662
> gi|973353088|ref|NM_002026.3| Homo sapiens fibronectin 1 (FN1),
transcript variant 3, mRNA
Length=8467
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AATTGCTAGTTTACCGTTCAGAAG 24
||||||||||||||||||||||||
Sbjct 8273 AATTGCTAGTTTACCGTTCAGAAG 8296
> gi|973353089|ref|NM_212478.2| Homo sapiens fibronectin 1 (FN1),
transcript variant 4, mRNA
Length=8392
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AATTGCTAGTTTACCGTTCAGAAG 24
||||||||||||||||||||||||
Sbjct 8198 AATTGCTAGTTTACCGTTCAGAAG 8221
> gi|973353090|ref|NM_212476.2| Homo sapiens fibronectin 1 (FN1),
transcript variant 5, mRNA
Length=8290
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AATTGCTAGTTTACCGTTCAGAAG 24
||||||||||||||||||||||||
Sbjct 8096 AATTGCTAGTTTACCGTTCAGAAG 8119
> gi|973353091|ref|NM_212474.2| Homo sapiens fibronectin 1 (FN1),
transcript variant 6, mRNA
Length=7930
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AATTGCTAGTTTACCGTTCAGAAG 24
||||||||||||||||||||||||
Sbjct 7736 AATTGCTAGTTTACCGTTCAGAAG 7759
> gi|807066341|ref|NM_001306129.1| Homo sapiens fibronectin 1 (FN1),
transcript variant 8, mRNA
Length=8742
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AATTGCTAGTTTACCGTTCAGAAG 24
||||||||||||||||||||||||
Sbjct 8548 AATTGCTAGTTTACCGTTCAGAAG 8571
> gi|807066343|ref|NM_001306130.1| Homo sapiens fibronectin 1 (FN1),
transcript variant 9, mRNA
Length=8205
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AATTGCTAGTTTACCGTTCAGAAG 24
||||||||||||||||||||||||
Sbjct 8011 AATTGCTAGTTTACCGTTCAGAAG 8034
> gi|807066345|ref|NM_001306131.1| Homo sapiens fibronectin 1 (FN1),
transcript variant 10, mRNA
Length=8199
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AATTGCTAGTTTACCGTTCAGAAG 24
||||||||||||||||||||||||
Sbjct 8005 AATTGCTAGTTTACCGTTCAGAAG 8028
> gi|807066347|ref|NM_001306132.1| Homo sapiens fibronectin 1 (FN1),
transcript variant 11, mRNA
Length=8124
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AATTGCTAGTTTACCGTTCAGAAG 24
||||||||||||||||||||||||
Sbjct 7930 AATTGCTAGTTTACCGTTCAGAAG 7953
> gi|1034580326|ref|XM_017019551.1| PREDICTED: Homo sapiens adaptor
protein, phosphotyrosine interacting with PH domain and
leucine zipper 2 (APPL2), transcript variant X2, mRNA
Length=3632
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 TGCTAGTTTACCGTT 18
|||||||||||||||
Sbjct 104 TGCTAGTTTACCGTT 90
> gi|1034580325|ref|XM_011538530.2| PREDICTED: Homo sapiens adaptor
protein, phosphotyrosine interacting with PH domain and
leucine zipper 2 (APPL2), transcript variant X1, mRNA
Length=4697
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 TGCTAGTTTACCGTT 18
|||||||||||||||
Sbjct 1151 TGCTAGTTTACCGTT 1137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4674360680
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2