BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AATGCGAGGTTTGTGTCTCC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|92859700|ref|NM_004999.3| Homo sapiens myosin VI (MYO6), tra... 40.1 0.002
gi|1034650383|ref|XM_005248726.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650381|ref|XM_017010899.1| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650380|ref|XM_005248724.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650379|ref|XM_005248722.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650378|ref|XM_005248721.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650377|ref|XM_005248720.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650376|ref|XM_005248719.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|665505982|ref|NM_001300899.1| Homo sapiens myosin VI (MYO6),... 40.1 0.002
gi|768021791|ref|XM_011529761.1| PREDICTED: Homo sapiens pyrido... 30.2 1.9
gi|578836704|ref|XM_005261198.2| PREDICTED: Homo sapiens pyrido... 30.2 1.9
gi|1034627648|ref|XM_011529760.2| PREDICTED: Homo sapiens pyrid... 30.2 1.9
gi|768021782|ref|XM_005261196.3| PREDICTED: Homo sapiens pyrido... 30.2 1.9
gi|1034627646|ref|XM_017028484.1| PREDICTED: Homo sapiens pyrid... 30.2 1.9
gi|1034627644|ref|XM_017028483.1| PREDICTED: Homo sapiens pyrid... 30.2 1.9
gi|578836705|ref|XM_005261199.2| PREDICTED: Homo sapiens pyrido... 30.2 1.9
gi|1034627643|ref|XM_011529758.2| PREDICTED: Homo sapiens pyrid... 30.2 1.9
gi|768021774|ref|XM_005261195.2| PREDICTED: Homo sapiens pyrido... 30.2 1.9
gi|148235211|ref|NM_003681.4| Homo sapiens pyridoxal (pyridoxin... 30.2 1.9
gi|1034568876|ref|XM_011519591.2| PREDICTED: Homo sapiens calci... 28.2 7.3
gi|1034649496|ref|XM_017010627.1| PREDICTED: Homo sapiens hes r... 28.2 7.3
gi|1034649498|ref|XM_017010628.1| PREDICTED: Homo sapiens hes r... 28.2 7.3
gi|105990529|ref|NM_012259.2| Homo sapiens hes related family b... 28.2 7.3
gi|1034649500|ref|XM_017010629.1| PREDICTED: Homo sapiens hes r... 28.2 7.3
gi|1034610916|ref|XM_006711916.3| PREDICTED: Homo sapiens leuci... 28.2 7.3
gi|1034610915|ref|XR_001738581.1| PREDICTED: Homo sapiens leuci... 28.2 7.3
gi|1034610913|ref|XM_017003117.1| PREDICTED: Homo sapiens leuci... 28.2 7.3
gi|767913642|ref|XM_006711915.2| PREDICTED: Homo sapiens leucin... 28.2 7.3
gi|767913640|ref|XM_011532473.1| PREDICTED: Homo sapiens leucin... 28.2 7.3
gi|187607278|ref|NM_133259.3| Homo sapiens leucine rich pentatr... 28.2 7.3
> gi|92859700|ref|NM_004999.3| Homo sapiens myosin VI (MYO6), transcript
variant 1, mRNA
Length=8662
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCTCC 20
||||||||||||||||||||
Sbjct 2790 AATGCGAGGTTTGTGTCTCC 2771
> gi|1034650383|ref|XM_005248726.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X7, mRNA
Length=8580
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCTCC 20
||||||||||||||||||||
Sbjct 2806 AATGCGAGGTTTGTGTCTCC 2787
> gi|1034650381|ref|XM_017010899.1| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X6, mRNA
Length=8610
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCTCC 20
||||||||||||||||||||
Sbjct 2806 AATGCGAGGTTTGTGTCTCC 2787
> gi|1034650380|ref|XM_005248724.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X5, mRNA
Length=8637
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCTCC 20
||||||||||||||||||||
Sbjct 2806 AATGCGAGGTTTGTGTCTCC 2787
> gi|1034650379|ref|XM_005248722.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X4, mRNA
Length=8649
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCTCC 20
||||||||||||||||||||
Sbjct 2806 AATGCGAGGTTTGTGTCTCC 2787
> gi|1034650378|ref|XM_005248721.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X3, mRNA
Length=8664
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCTCC 20
||||||||||||||||||||
Sbjct 2806 AATGCGAGGTTTGTGTCTCC 2787
> gi|1034650377|ref|XM_005248720.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X2, mRNA
Length=8676
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCTCC 20
||||||||||||||||||||
Sbjct 2806 AATGCGAGGTTTGTGTCTCC 2787
> gi|1034650376|ref|XM_005248719.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X1, mRNA
Length=8703
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCTCC 20
||||||||||||||||||||
Sbjct 2806 AATGCGAGGTTTGTGTCTCC 2787
> gi|665505982|ref|NM_001300899.1| Homo sapiens myosin VI (MYO6),
transcript variant 2, mRNA
Length=8609
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCTCC 20
||||||||||||||||||||
Sbjct 2806 AATGCGAGGTTTGTGTCTCC 2787
> gi|768021791|ref|XM_011529761.1| PREDICTED: Homo sapiens pyridoxal
(pyridoxine, vitamin B6) kinase (PDXK), transcript variant
X9, mRNA
Length=7084
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2139 GAGGTTTGTGTCTCC 2153
> gi|578836704|ref|XM_005261198.2| PREDICTED: Homo sapiens pyridoxal
(pyridoxine, vitamin B6) kinase (PDXK), transcript variant
X4, mRNA
Length=7220
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2275 GAGGTTTGTGTCTCC 2289
> gi|1034627648|ref|XM_011529760.2| PREDICTED: Homo sapiens pyridoxal
(pyridoxine, vitamin B6) kinase (PDXK), transcript variant
X8, mRNA
Length=7072
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2127 GAGGTTTGTGTCTCC 2141
> gi|768021782|ref|XM_005261196.3| PREDICTED: Homo sapiens pyridoxal
(pyridoxine, vitamin B6) kinase (PDXK), transcript variant
X3, mRNA
Length=7215
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2270 GAGGTTTGTGTCTCC 2284
> gi|1034627646|ref|XM_017028484.1| PREDICTED: Homo sapiens pyridoxal
(pyridoxine, vitamin B6) kinase (PDXK), transcript variant
X6, mRNA
Length=7847
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2902 GAGGTTTGTGTCTCC 2916
> gi|1034627644|ref|XM_017028483.1| PREDICTED: Homo sapiens pyridoxal
(pyridoxine, vitamin B6) kinase (PDXK), transcript variant
X5, mRNA
Length=7517
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2572 GAGGTTTGTGTCTCC 2586
> gi|578836705|ref|XM_005261199.2| PREDICTED: Homo sapiens pyridoxal
(pyridoxine, vitamin B6) kinase (PDXK), transcript variant
X7, mRNA
Length=7217
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2272 GAGGTTTGTGTCTCC 2286
> gi|1034627643|ref|XM_011529758.2| PREDICTED: Homo sapiens pyridoxal
(pyridoxine, vitamin B6) kinase (PDXK), transcript variant
X2, mRNA
Length=7760
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2815 GAGGTTTGTGTCTCC 2829
> gi|768021774|ref|XM_005261195.2| PREDICTED: Homo sapiens pyridoxal
(pyridoxine, vitamin B6) kinase (PDXK), transcript variant
X1, mRNA
Length=7470
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2525 GAGGTTTGTGTCTCC 2539
> gi|148235211|ref|NM_003681.4| Homo sapiens pyridoxal (pyridoxine,
vitamin B6) kinase (PDXK), mRNA
Length=7390
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GAGGTTTGTGTCTCC 20
|||||||||||||||
Sbjct 2426 GAGGTTTGTGTCTCC 2440
> gi|1034568876|ref|XM_011519591.2| PREDICTED: Homo sapiens calcium/calmodulin
dependent protein kinase ID (CAMK1D), transcript
variant X1, mRNA
Length=8529
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 AATGCGAGGTTTGT 14
||||||||||||||
Sbjct 522 AATGCGAGGTTTGT 535
> gi|1034649496|ref|XM_017010627.1| PREDICTED: Homo sapiens hes
related family bHLH transcription factor with YRPW motif 2
(HEY2), transcript variant X1, mRNA
Length=5030
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GAGGTTTGTGTCTC 19
||||||||||||||
Sbjct 2729 GAGGTTTGTGTCTC 2716
> gi|1034649498|ref|XM_017010628.1| PREDICTED: Homo sapiens hes
related family bHLH transcription factor with YRPW motif 2
(HEY2), transcript variant X2, mRNA
Length=4728
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GAGGTTTGTGTCTC 19
||||||||||||||
Sbjct 2427 GAGGTTTGTGTCTC 2414
> gi|105990529|ref|NM_012259.2| Homo sapiens hes related family
bHLH transcription factor with YRPW motif 2 (HEY2), mRNA
Length=2672
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GAGGTTTGTGTCTC 19
||||||||||||||
Sbjct 1345 GAGGTTTGTGTCTC 1332
> gi|1034649500|ref|XM_017010629.1| PREDICTED: Homo sapiens hes
related family bHLH transcription factor with YRPW motif 2
(HEY2), transcript variant X3, mRNA
Length=2535
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GAGGTTTGTGTCTC 19
||||||||||||||
Sbjct 1206 GAGGTTTGTGTCTC 1193
> gi|1034610916|ref|XM_006711916.3| PREDICTED: Homo sapiens leucine
rich pentatricopeptide repeat containing (LRPPRC), transcript
variant X5, mRNA
Length=3305
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCT 18
|||||||||| |||||||
Sbjct 860 AATGCGAGGTATGTGTCT 843
> gi|1034610915|ref|XR_001738581.1| PREDICTED: Homo sapiens leucine
rich pentatricopeptide repeat containing (LRPPRC), transcript
variant X4, misc_RNA
Length=4280
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCT 18
|||||||||| |||||||
Sbjct 860 AATGCGAGGTATGTGTCT 843
> gi|1034610913|ref|XM_017003117.1| PREDICTED: Homo sapiens leucine
rich pentatricopeptide repeat containing (LRPPRC), transcript
variant X3, mRNA
Length=5007
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCT 18
|||||||||| |||||||
Sbjct 858 AATGCGAGGTATGTGTCT 841
> gi|767913642|ref|XM_006711915.2| PREDICTED: Homo sapiens leucine
rich pentatricopeptide repeat containing (LRPPRC), transcript
variant X2, mRNA
Length=5109
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCT 18
|||||||||| |||||||
Sbjct 885 AATGCGAGGTATGTGTCT 868
> gi|767913640|ref|XM_011532473.1| PREDICTED: Homo sapiens leucine
rich pentatricopeptide repeat containing (LRPPRC), transcript
variant X1, mRNA
Length=5009
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCT 18
|||||||||| |||||||
Sbjct 860 AATGCGAGGTATGTGTCT 843
> gi|187607278|ref|NM_133259.3| Homo sapiens leucine rich pentatricopeptide
repeat containing (LRPPRC), mRNA
Length=6637
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AATGCGAGGTTTGTGTCT 18
|||||||||| |||||||
Sbjct 876 AATGCGAGGTATGTGTCT 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2