BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AATCACTGGCTCACATGCAG (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|92859700|ref|NM_004999.3| Homo sapiens myosin VI (MYO6), tra... 40.1 0.002
gi|1034650383|ref|XM_005248726.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650381|ref|XM_017010899.1| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650380|ref|XM_005248724.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650379|ref|XM_005248722.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650378|ref|XM_005248721.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650377|ref|XM_005248720.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|1034650376|ref|XM_005248719.3| PREDICTED: Homo sapiens myosi... 40.1 0.002
gi|665505982|ref|NM_001300899.1| Homo sapiens myosin VI (MYO6),... 40.1 0.002
gi|767973862|ref|XM_006719344.2| PREDICTED: Homo sapiens zinc f... 30.2 1.9
gi|767973865|ref|XR_944519.1| PREDICTED: Homo sapiens zinc fing... 30.2 1.9
gi|1034579102|ref|XR_001748655.1| PREDICTED: Homo sapiens zinc ... 30.2 1.9
gi|145046251|ref|NM_001004304.3| Homo sapiens zinc finger prote... 30.2 1.9
gi|1034579101|ref|XM_011538194.2| PREDICTED: Homo sapiens zinc ... 30.2 1.9
gi|1034579103|ref|XM_017019181.1| PREDICTED: Homo sapiens zinc ... 30.2 1.9
gi|1034664765|ref|XM_011518468.2| PREDICTED: Homo sapiens hemic... 28.2 7.3
gi|1034673457|ref|XM_017029251.1| PREDICTED: Homo sapiens V-set... 28.2 7.3
gi|296434250|ref|NM_001184830.1| Homo sapiens V-set and immunog... 28.2 7.3
gi|154426251|ref|NM_007268.2| Homo sapiens V-set and immunoglob... 28.2 7.3
gi|383872566|ref|NM_001257403.1| Homo sapiens V-set and immunog... 28.2 7.3
gi|296434254|ref|NM_001184831.1| Homo sapiens V-set and immunog... 28.2 7.3
gi|154426279|ref|NM_001100431.1| Homo sapiens V-set and immunog... 28.2 7.3
gi|1034594749|ref|XM_017023272.1| PREDICTED: Homo sapiens 3-pho... 28.2 7.3
gi|1034594748|ref|XM_011522521.2| PREDICTED: Homo sapiens 3-pho... 28.2 7.3
gi|1034594757|ref|XM_011522523.2| PREDICTED: Homo sapiens 3-pho... 28.2 7.3
gi|1034594746|ref|XM_017023271.1| PREDICTED: Homo sapiens 3-pho... 28.2 7.3
gi|1034594755|ref|XM_017023275.1| PREDICTED: Homo sapiens 3-pho... 28.2 7.3
gi|1034594758|ref|XM_017023276.1| PREDICTED: Homo sapiens 3-pho... 28.2 7.3
gi|1034594760|ref|XM_017023277.1| PREDICTED: Homo sapiens 3-pho... 28.2 7.3
gi|1034594753|ref|XM_017023274.1| PREDICTED: Homo sapiens 3-pho... 28.2 7.3
gi|1034594751|ref|XM_017023273.1| PREDICTED: Homo sapiens 3-pho... 28.2 7.3
gi|387849237|ref|NM_031268.5| Homo sapiens 3-phosphoinositide d... 28.2 7.3
gi|387849238|ref|NM_001261816.1| Homo sapiens 3-phosphoinositid... 28.2 7.3
gi|387849236|ref|NM_002613.4| Homo sapiens 3-phosphoinositide d... 28.2 7.3
gi|952977825|ref|NM_153757.3| Homo sapiens nucleosome assembly ... 28.2 7.3
gi|1034617489|ref|XM_017005217.1| PREDICTED: Homo sapiens kynur... 28.2 7.3
gi|344217734|ref|NM_001243764.1| Homo sapiens RAB GTPase activa... 28.2 7.3
gi|1034563853|ref|XM_017002997.1| PREDICTED: Homo sapiens RAB G... 28.2 7.3
gi|1034563851|ref|XM_017002996.1| PREDICTED: Homo sapiens RAB G... 28.2 7.3
gi|1034563855|ref|XM_017002998.1| PREDICTED: Homo sapiens RAB G... 28.2 7.3
gi|1034563857|ref|XM_017002999.1| PREDICTED: Homo sapiens RAB G... 28.2 7.3
gi|344217736|ref|NM_001243765.1| Homo sapiens RAB GTPase activa... 28.2 7.3
gi|1034563849|ref|XM_017002995.1| PREDICTED: Homo sapiens RAB G... 28.2 7.3
gi|578801876|ref|XM_006711693.1| PREDICTED: Homo sapiens RAB GT... 28.2 7.3
gi|530365777|ref|XM_005245680.1| PREDICTED: Homo sapiens RAB GT... 28.2 7.3
gi|1034563846|ref|XR_001737553.1| PREDICTED: Homo sapiens RAB G... 28.2 7.3
> gi|92859700|ref|NM_004999.3| Homo sapiens myosin VI (MYO6), transcript
variant 1, mRNA
Length=8662
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AATCACTGGCTCACATGCAG 20
||||||||||||||||||||
Sbjct 2632 AATCACTGGCTCACATGCAG 2651
> gi|1034650383|ref|XM_005248726.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X7, mRNA
Length=8580
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AATCACTGGCTCACATGCAG 20
||||||||||||||||||||
Sbjct 2648 AATCACTGGCTCACATGCAG 2667
> gi|1034650381|ref|XM_017010899.1| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X6, mRNA
Length=8610
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AATCACTGGCTCACATGCAG 20
||||||||||||||||||||
Sbjct 2648 AATCACTGGCTCACATGCAG 2667
> gi|1034650380|ref|XM_005248724.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X5, mRNA
Length=8637
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AATCACTGGCTCACATGCAG 20
||||||||||||||||||||
Sbjct 2648 AATCACTGGCTCACATGCAG 2667
> gi|1034650379|ref|XM_005248722.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X4, mRNA
Length=8649
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AATCACTGGCTCACATGCAG 20
||||||||||||||||||||
Sbjct 2648 AATCACTGGCTCACATGCAG 2667
> gi|1034650378|ref|XM_005248721.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X3, mRNA
Length=8664
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AATCACTGGCTCACATGCAG 20
||||||||||||||||||||
Sbjct 2648 AATCACTGGCTCACATGCAG 2667
> gi|1034650377|ref|XM_005248720.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X2, mRNA
Length=8676
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AATCACTGGCTCACATGCAG 20
||||||||||||||||||||
Sbjct 2648 AATCACTGGCTCACATGCAG 2667
> gi|1034650376|ref|XM_005248719.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X1, mRNA
Length=8703
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AATCACTGGCTCACATGCAG 20
||||||||||||||||||||
Sbjct 2648 AATCACTGGCTCACATGCAG 2667
> gi|665505982|ref|NM_001300899.1| Homo sapiens myosin VI (MYO6),
transcript variant 2, mRNA
Length=8609
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AATCACTGGCTCACATGCAG 20
||||||||||||||||||||
Sbjct 2648 AATCACTGGCTCACATGCAG 2667
> gi|767973862|ref|XM_006719344.2| PREDICTED: Homo sapiens zinc
finger protein 740 (ZNF740), transcript variant X1, mRNA
Length=3190
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 6 CTGGCTCACATGCAG 20
|||||||||||||||
Sbjct 2040 CTGGCTCACATGCAG 2026
> gi|767973865|ref|XR_944519.1| PREDICTED: Homo sapiens zinc finger
protein 740 (ZNF740), transcript variant X5, misc_RNA
Length=3453
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 6 CTGGCTCACATGCAG 20
|||||||||||||||
Sbjct 2303 CTGGCTCACATGCAG 2289
> gi|1034579102|ref|XR_001748655.1| PREDICTED: Homo sapiens zinc
finger protein 740 (ZNF740), transcript variant X3, misc_RNA
Length=4444
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 6 CTGGCTCACATGCAG 20
|||||||||||||||
Sbjct 3294 CTGGCTCACATGCAG 3280
> gi|145046251|ref|NM_001004304.3| Homo sapiens zinc finger protein
740 (ZNF740), mRNA
Length=4256
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 6 CTGGCTCACATGCAG 20
|||||||||||||||
Sbjct 3101 CTGGCTCACATGCAG 3087
> gi|1034579101|ref|XM_011538194.2| PREDICTED: Homo sapiens zinc
finger protein 740 (ZNF740), transcript variant X2, mRNA
Length=3415
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 6 CTGGCTCACATGCAG 20
|||||||||||||||
Sbjct 2265 CTGGCTCACATGCAG 2251
> gi|1034579103|ref|XM_017019181.1| PREDICTED: Homo sapiens zinc
finger protein 740 (ZNF740), transcript variant X4, mRNA
Length=4485
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 6 CTGGCTCACATGCAG 20
|||||||||||||||
Sbjct 3335 CTGGCTCACATGCAG 3321
> gi|1034664765|ref|XM_011518468.2| PREDICTED: Homo sapiens hemicentin
2 (HMCN2), transcript variant X4, mRNA
Length=14971
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 TGGCTCACATGCAG 20
||||||||||||||
Sbjct 14844 TGGCTCACATGCAG 14857
> gi|1034673457|ref|XM_017029251.1| PREDICTED: Homo sapiens V-set
and immunoglobulin domain containing 4 (VSIG4), transcript
variant X1, mRNA
Length=1195
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGGCTCACATGCAG 20
||||||||||||||
Sbjct 355 TGGCTCACATGCAG 342
> gi|296434250|ref|NM_001184830.1| Homo sapiens V-set and immunoglobulin
domain containing 4 (VSIG4), transcript variant 4,
mRNA
Length=2209
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGGCTCACATGCAG 20
||||||||||||||
Sbjct 396 TGGCTCACATGCAG 383
> gi|154426251|ref|NM_007268.2| Homo sapiens V-set and immunoglobulin
domain containing 4 (VSIG4), transcript variant 1, mRNA
Length=1869
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGGCTCACATGCAG 20
||||||||||||||
Sbjct 396 TGGCTCACATGCAG 383
> gi|383872566|ref|NM_001257403.1| Homo sapiens V-set and immunoglobulin
domain containing 4 (VSIG4), transcript variant 5,
mRNA
Length=1535
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGGCTCACATGCAG 20
||||||||||||||
Sbjct 396 TGGCTCACATGCAG 383
> gi|296434254|ref|NM_001184831.1| Homo sapiens V-set and immunoglobulin
domain containing 4 (VSIG4), transcript variant 3,
mRNA
Length=1927
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGGCTCACATGCAG 20
||||||||||||||
Sbjct 396 TGGCTCACATGCAG 383
> gi|154426279|ref|NM_001100431.1| Homo sapiens V-set and immunoglobulin
domain containing 4 (VSIG4), transcript variant 2,
mRNA
Length=1586
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGGCTCACATGCAG 20
||||||||||||||
Sbjct 396 TGGCTCACATGCAG 383
> gi|1034594749|ref|XM_017023272.1| PREDICTED: Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript
variant X3, mRNA
Length=7865
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 4195 TCACAGGCTCACATGCAG 4178
> gi|1034594748|ref|XM_011522521.2| PREDICTED: Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript
variant X2, mRNA
Length=10929
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 7259 TCACAGGCTCACATGCAG 7242
> gi|1034594757|ref|XM_011522523.2| PREDICTED: Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript
variant X7, mRNA
Length=10553
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 6883 TCACAGGCTCACATGCAG 6866
> gi|1034594746|ref|XM_017023271.1| PREDICTED: Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript
variant X1, mRNA
Length=11311
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 7639 TCACAGGCTCACATGCAG 7622
> gi|1034594755|ref|XM_017023275.1| PREDICTED: Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript
variant X6, mRNA
Length=10934
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 7264 TCACAGGCTCACATGCAG 7247
> gi|1034594758|ref|XM_017023276.1| PREDICTED: Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript
variant X8, mRNA
Length=7178
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 3508 TCACAGGCTCACATGCAG 3491
> gi|1034594760|ref|XM_017023277.1| PREDICTED: Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript
variant X9, mRNA
Length=7276
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 3606 TCACAGGCTCACATGCAG 3589
> gi|1034594753|ref|XM_017023274.1| PREDICTED: Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript
variant X5, mRNA
Length=7712
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 4042 TCACAGGCTCACATGCAG 4025
> gi|1034594751|ref|XM_017023273.1| PREDICTED: Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript
variant X4, mRNA
Length=7574
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 3904 TCACAGGCTCACATGCAG 3887
> gi|387849237|ref|NM_031268.5| Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript variant 2, mRNA
Length=6862
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 3190 TCACAGGCTCACATGCAG 3173
> gi|387849238|ref|NM_001261816.1| Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript variant 3,
mRNA
Length=7032
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 3360 TCACAGGCTCACATGCAG 3343
> gi|387849236|ref|NM_002613.4| Homo sapiens 3-phosphoinositide
dependent protein kinase 1 (PDPK1), transcript variant 1, mRNA
Length=7243
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACATGCAG 20
|||| |||||||||||||
Sbjct 3571 TCACAGGCTCACATGCAG 3554
> gi|952977825|ref|NM_153757.3| Homo sapiens nucleosome assembly
protein 1 like 5 (NAP1L5), mRNA
Length=2338
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 2252 ATCACTGGCTCACA 2239
> gi|1034617489|ref|XM_017005217.1| PREDICTED: Homo sapiens kynureninase
(KYNU), transcript variant X3, mRNA
Length=12557
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TCACTGGCTCACAT 16
||||||||||||||
Sbjct 2749 TCACTGGCTCACAT 2736
> gi|344217734|ref|NM_001243764.1| Homo sapiens RAB GTPase activating
protein 1-like (RABGAP1L), transcript variant 5, mRNA
Length=6266
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 6181 ATCACTGGCTCACA 6168
> gi|1034563853|ref|XM_017002997.1| PREDICTED: Homo sapiens RAB
GTPase activating protein 1-like (RABGAP1L), transcript variant
X10, mRNA
Length=6533
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 6466 ATCACTGGCTCACA 6453
> gi|1034563851|ref|XM_017002996.1| PREDICTED: Homo sapiens RAB
GTPase activating protein 1-like (RABGAP1L), transcript variant
X9, mRNA
Length=6425
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 6358 ATCACTGGCTCACA 6345
> gi|1034563855|ref|XM_017002998.1| PREDICTED: Homo sapiens RAB
GTPase activating protein 1-like (RABGAP1L), transcript variant
X11, mRNA
Length=13520
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 13453 ATCACTGGCTCACA 13440
> gi|1034563857|ref|XM_017002999.1| PREDICTED: Homo sapiens RAB
GTPase activating protein 1-like (RABGAP1L), transcript variant
X12, mRNA
Length=6333
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 6266 ATCACTGGCTCACA 6253
> gi|344217736|ref|NM_001243765.1| Homo sapiens RAB GTPase activating
protein 1-like (RABGAP1L), transcript variant 4, mRNA
Length=6874
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 6789 ATCACTGGCTCACA 6776
> gi|1034563849|ref|XM_017002995.1| PREDICTED: Homo sapiens RAB
GTPase activating protein 1-like (RABGAP1L), transcript variant
X8, mRNA
Length=7942
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 7875 ATCACTGGCTCACA 7862
> gi|578801876|ref|XM_006711693.1| PREDICTED: Homo sapiens RAB
GTPase activating protein 1-like (RABGAP1L), transcript variant
X4, mRNA
Length=8472
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 8405 ATCACTGGCTCACA 8392
> gi|530365777|ref|XM_005245680.1| PREDICTED: Homo sapiens RAB
GTPase activating protein 1-like (RABGAP1L), transcript variant
X1, mRNA
Length=8670
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 8603 ATCACTGGCTCACA 8590
> gi|1034563846|ref|XR_001737553.1| PREDICTED: Homo sapiens RAB
GTPase activating protein 1-like (RABGAP1L), transcript variant
X5, misc_RNA
Length=8884
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 ATCACTGGCTCACA 15
||||||||||||||
Sbjct 8817 ATCACTGGCTCACA 8804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2