BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AAGGTTAAGGTGAGCTCATCG (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding p... 42.1 6e-04
gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding p... 38.2 0.010
gi|1034697301|ref|XR_001758910.1| PREDICTED: Homo sapiens uncha... 30.2 2.3
gi|1034662752|ref|XR_001745823.1| PREDICTED: Homo sapiens uncha... 30.2 2.3
gi|767913382|ref|XM_011510409.1| PREDICTED: Homo sapiens ArfGAP... 30.2 2.3
gi|1034617437|ref|XM_006711901.3| PREDICTED: Homo sapiens ArfGA... 30.2 2.3
gi|1034617435|ref|XM_011510406.2| PREDICTED: Homo sapiens ArfGA... 30.2 2.3
gi|1034617433|ref|XM_011510404.2| PREDICTED: Homo sapiens ArfGA... 30.2 2.3
gi|1034617436|ref|XM_011510407.2| PREDICTED: Homo sapiens ArfGA... 30.2 2.3
gi|1034617432|ref|XM_011510403.2| PREDICTED: Homo sapiens ArfGA... 30.2 2.3
gi|1034617434|ref|XM_011510405.2| PREDICTED: Homo sapiens ArfGA... 30.2 2.3
gi|578802588|ref|XM_006711902.1| PREDICTED: Homo sapiens ArfGAP... 30.2 2.3
gi|578802580|ref|XM_006711898.1| PREDICTED: Homo sapiens ArfGAP... 30.2 2.3
gi|206597521|ref|NM_001135191.1| Homo sapiens ArfGAP with SH3 d... 30.2 2.3
gi|206597520|ref|NM_003887.2| Homo sapiens ArfGAP with SH3 doma... 30.2 2.3
gi|1034697448|ref|XR_956910.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034697447|ref|XR_001758982.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|38683401|ref|NR_001589.1| Homo sapiens hemoglobin subunit be... 28.2 9.2
gi|1034662900|ref|XR_928859.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034662899|ref|XR_001745894.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034690024|ref|XR_001735961.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034690023|ref|XR_001735960.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034690020|ref|XR_001735957.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|531990807|ref|NM_004979.5| Homo sapiens potassium voltage-ga... 28.2 9.2
gi|1034674268|ref|XM_017029508.1| PREDICTED: Homo sapiens potas... 28.2 9.2
gi|1034674270|ref|XM_017029509.1| PREDICTED: Homo sapiens potas... 28.2 9.2
gi|1034674267|ref|XM_011543910.2| PREDICTED: Homo sapiens potas... 28.2 9.2
gi|1034627092|ref|XM_011529515.2| PREDICTED: Homo sapiens induc... 28.2 9.2
gi|1034627094|ref|XM_017028310.1| PREDICTED: Homo sapiens induc... 28.2 9.2
gi|545688662|ref|NM_015259.5| Homo sapiens inducible T-cell co-... 28.2 9.2
gi|545688893|ref|NM_001283052.1| Homo sapiens inducible T-cell ... 28.2 9.2
gi|545688598|ref|NM_001283051.1| Homo sapiens inducible T-cell ... 28.2 9.2
gi|545688559|ref|NM_001283050.1| Homo sapiens inducible T-cell ... 28.2 9.2
gi|1034627091|ref|XM_011529514.2| PREDICTED: Homo sapiens induc... 28.2 9.2
gi|1034627093|ref|XM_011529516.2| PREDICTED: Homo sapiens induc... 28.2 9.2
gi|768019565|ref|XM_011546079.1| PREDICTED: Homo sapiens ICOS l... 28.2 9.2
gi|768019559|ref|XM_006723899.2| PREDICTED: Homo sapiens ICOS l... 28.2 9.2
gi|768019569|ref|XM_006723900.2| PREDICTED: Homo sapiens ICOS l... 28.2 9.2
gi|1034627737|ref|XM_011546078.2| PREDICTED: Homo sapiens ICOS ... 28.2 9.2
gi|1034626765|ref|XR_001754749.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034626764|ref|XR_001754748.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1020158945|ref|NM_001207047.2| Homo sapiens attractin (ATRN)... 28.2 9.2
gi|1020158988|ref|NM_139322.3| Homo sapiens attractin (ATRN), t... 28.2 9.2
gi|1020158886|ref|NM_001323332.1| Homo sapiens attractin (ATRN)... 28.2 9.2
gi|197245425|ref|NM_139321.2| Homo sapiens attractin (ATRN), tr... 28.2 9.2
> gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 1, mRNA
Length=1775
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 AAGGTTAAGGTGAGCTCATCG 21
|||||||||||||||||||||
Sbjct 383 AAGGTTAAGGTGAGCTCATCG 403
> gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 2, non-coding
RNA
Length=1644
Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 GGTTAAGGTGAGCTCATCG 21
|||||||||||||||||||
Sbjct 254 GGTTAAGGTGAGCTCATCG 272
> gi|1034697301|ref|XR_001758910.1| PREDICTED: Homo sapiens uncharacterized
LOC107986922 (LOC107986922), ncRNA
Length=1882
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GTTAAGGTGAGCTCA 18
|||||||||||||||
Sbjct 678 GTTAAGGTGAGCTCA 664
> gi|1034662752|ref|XR_001745823.1| PREDICTED: Homo sapiens uncharacterized
LOC107986922 (LOC107986922), ncRNA
Length=1882
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GTTAAGGTGAGCTCA 18
|||||||||||||||
Sbjct 678 GTTAAGGTGAGCTCA 664
> gi|767913382|ref|XM_011510409.1| PREDICTED: Homo sapiens ArfGAP
with SH3 domain, ankyrin repeat and PH domain 2 (ASAP2),
transcript variant X10, mRNA
Length=5366
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 2888 AAGGTGAGCTCATCG 2874
> gi|1034617437|ref|XM_006711901.3| PREDICTED: Homo sapiens ArfGAP
with SH3 domain, ankyrin repeat and PH domain 2 (ASAP2),
transcript variant X7, mRNA
Length=5324
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 2846 AAGGTGAGCTCATCG 2832
> gi|1034617435|ref|XM_011510406.2| PREDICTED: Homo sapiens ArfGAP
with SH3 domain, ankyrin repeat and PH domain 2 (ASAP2),
transcript variant X5, mRNA
Length=5428
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 2950 AAGGTGAGCTCATCG 2936
> gi|1034617433|ref|XM_011510404.2| PREDICTED: Homo sapiens ArfGAP
with SH3 domain, ankyrin repeat and PH domain 2 (ASAP2),
transcript variant X2, mRNA
Length=5485
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 3007 AAGGTGAGCTCATCG 2993
> gi|1034617436|ref|XM_011510407.2| PREDICTED: Homo sapiens ArfGAP
with SH3 domain, ankyrin repeat and PH domain 2 (ASAP2),
transcript variant X6, mRNA
Length=5360
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 2882 AAGGTGAGCTCATCG 2868
> gi|1034617432|ref|XM_011510403.2| PREDICTED: Homo sapiens ArfGAP
with SH3 domain, ankyrin repeat and PH domain 2 (ASAP2),
transcript variant X1, mRNA
Length=5495
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 3017 AAGGTGAGCTCATCG 3003
> gi|1034617434|ref|XM_011510405.2| PREDICTED: Homo sapiens ArfGAP
with SH3 domain, ankyrin repeat and PH domain 2 (ASAP2),
transcript variant X4, mRNA
Length=5421
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 2943 AAGGTGAGCTCATCG 2929
> gi|578802588|ref|XM_006711902.1| PREDICTED: Homo sapiens ArfGAP
with SH3 domain, ankyrin repeat and PH domain 2 (ASAP2),
transcript variant X8, mRNA
Length=5339
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 2861 AAGGTGAGCTCATCG 2847
> gi|578802580|ref|XM_006711898.1| PREDICTED: Homo sapiens ArfGAP
with SH3 domain, ankyrin repeat and PH domain 2 (ASAP2),
transcript variant X3, mRNA
Length=5474
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 2996 AAGGTGAGCTCATCG 2982
> gi|206597521|ref|NM_001135191.1| Homo sapiens ArfGAP with SH3
domain, ankyrin repeat and PH domain 2 (ASAP2), transcript
variant 2, mRNA
Length=5589
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 3099 AAGGTGAGCTCATCG 3085
> gi|206597520|ref|NM_003887.2| Homo sapiens ArfGAP with SH3 domain,
ankyrin repeat and PH domain 2 (ASAP2), transcript variant
1, mRNA
Length=5724
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATCG 21
|||||||||||||||
Sbjct 3234 AAGGTGAGCTCATCG 3220
> gi|1034697448|ref|XR_956910.2| PREDICTED: Homo sapiens uncharacterized
LOC105375825 (LOC105375825), transcript variant X2,
ncRNA
Length=8497
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 727 AAGGTGAGCTCATC 740
> gi|1034697447|ref|XR_001758982.1| PREDICTED: Homo sapiens uncharacterized
LOC105375825 (LOC105375825), transcript variant
X1, ncRNA
Length=8570
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 800 AAGGTGAGCTCATC 813
> gi|38683401|ref|NR_001589.1| Homo sapiens hemoglobin subunit
beta pseudogene 1 (HBBP1), non-coding RNA
Length=660
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 AAGGTTAAGGTGAG 14
||||||||||||||
Sbjct 104 AAGGTTAAGGTGAG 117
> gi|1034662900|ref|XR_928859.2| PREDICTED: Homo sapiens uncharacterized
LOC105375825 (LOC105375825), transcript variant X2,
ncRNA
Length=8497
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 727 AAGGTGAGCTCATC 740
> gi|1034662899|ref|XR_001745894.1| PREDICTED: Homo sapiens uncharacterized
LOC105375825 (LOC105375825), transcript variant
X1, ncRNA
Length=8570
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 800 AAGGTGAGCTCATC 813
> gi|1034690024|ref|XR_001735961.1| PREDICTED: Homo sapiens uncharacterized
LOC105372698 (LOC105372698), transcript variant
X6, misc_RNA
Length=7138
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AAGGTTAAGGTGAG 14
||||||||||||||
Sbjct 1231 AAGGTTAAGGTGAG 1218
> gi|1034690023|ref|XR_001735960.1| PREDICTED: Homo sapiens uncharacterized
LOC105372698 (LOC105372698), transcript variant
X5, misc_RNA
Length=7143
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AAGGTTAAGGTGAG 14
||||||||||||||
Sbjct 1231 AAGGTTAAGGTGAG 1218
> gi|1034690020|ref|XR_001735957.1| PREDICTED: Homo sapiens uncharacterized
LOC105372698 (LOC105372698), transcript variant
X12, misc_RNA
Length=8552
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AAGGTTAAGGTGAG 14
||||||||||||||
Sbjct 1231 AAGGTTAAGGTGAG 1218
> gi|531990807|ref|NM_004979.5| Homo sapiens potassium voltage-gated
channel subfamily D member 1 (KCND1), mRNA
Length=4720
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 3069 AAGGTGAGCTCATC 3056
> gi|1034674268|ref|XM_017029508.1| PREDICTED: Homo sapiens potassium
voltage-gated channel subfamily D member 1 (KCND1), transcript
variant X2, mRNA
Length=3854
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 1808 AAGGTGAGCTCATC 1795
> gi|1034674270|ref|XM_017029509.1| PREDICTED: Homo sapiens potassium
voltage-gated channel subfamily D member 1 (KCND1), transcript
variant X3, mRNA
Length=3851
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 1805 AAGGTGAGCTCATC 1792
> gi|1034674267|ref|XM_011543910.2| PREDICTED: Homo sapiens potassium
voltage-gated channel subfamily D member 1 (KCND1), transcript
variant X1, mRNA
Length=4023
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 1977 AAGGTGAGCTCATC 1964
> gi|1034627092|ref|XM_011529515.2| PREDICTED: Homo sapiens inducible
T-cell co-stimulator ligand (ICOSLG), transcript variant
X2, mRNA
Length=2024
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 1097 AAGGTGAGCTCATC 1084
> gi|1034627094|ref|XM_017028310.1| PREDICTED: Homo sapiens inducible
T-cell co-stimulator ligand (ICOSLG), transcript variant
X4, mRNA
Length=3593
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 944 AAGGTGAGCTCATC 931
> gi|545688662|ref|NM_015259.5| Homo sapiens inducible T-cell co-stimulator
ligand (ICOSLG), transcript variant 1, mRNA
Length=3320
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 654 AAGGTGAGCTCATC 641
> gi|545688893|ref|NM_001283052.1| Homo sapiens inducible T-cell
co-stimulator ligand (ICOSLG), transcript variant 4, mRNA
Length=3168
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 502 AAGGTGAGCTCATC 489
> gi|545688598|ref|NM_001283051.1| Homo sapiens inducible T-cell
co-stimulator ligand (ICOSLG), transcript variant 3, mRNA
Length=2969
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 303 AAGGTGAGCTCATC 290
> gi|545688559|ref|NM_001283050.1| Homo sapiens inducible T-cell
co-stimulator ligand (ICOSLG), transcript variant 2, mRNA
Length=1188
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 654 AAGGTGAGCTCATC 641
> gi|1034627091|ref|XM_011529514.2| PREDICTED: Homo sapiens inducible
T-cell co-stimulator ligand (ICOSLG), transcript variant
X1, mRNA
Length=2792
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 1097 AAGGTGAGCTCATC 1084
> gi|1034627093|ref|XM_011529516.2| PREDICTED: Homo sapiens inducible
T-cell co-stimulator ligand (ICOSLG), transcript variant
X3, mRNA
Length=2185
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 489 AAGGTGAGCTCATC 476
> gi|768019565|ref|XM_011546079.1| PREDICTED: Homo sapiens ICOS
ligand (LOC102723996), transcript variant X3, mRNA
Length=2030
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 1103 AAGGTGAGCTCATC 1090
> gi|768019559|ref|XM_006723899.2| PREDICTED: Homo sapiens ICOS
ligand (LOC102723996), transcript variant X1, mRNA
Length=2666
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 1103 AAGGTGAGCTCATC 1090
> gi|768019569|ref|XM_006723900.2| PREDICTED: Homo sapiens ICOS
ligand (LOC102723996), transcript variant X4, mRNA
Length=3728
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 1103 AAGGTGAGCTCATC 1090
> gi|1034627737|ref|XM_011546078.2| PREDICTED: Homo sapiens ICOS
ligand (LOC102723996), transcript variant X2, mRNA
Length=2794
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGGTGAGCTCATC 20
||||||||||||||
Sbjct 1103 AAGGTGAGCTCATC 1090
> gi|1034626765|ref|XR_001754749.1| PREDICTED: Homo sapiens uncharacterized
LOC105372698 (LOC105372698), transcript variant
X6, misc_RNA
Length=7138
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AAGGTTAAGGTGAG 14
||||||||||||||
Sbjct 1231 AAGGTTAAGGTGAG 1218
> gi|1034626764|ref|XR_001754748.1| PREDICTED: Homo sapiens uncharacterized
LOC105372698 (LOC105372698), transcript variant
X5, misc_RNA
Length=7143
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 AAGGTTAAGGTGAG 14
||||||||||||||
Sbjct 1231 AAGGTTAAGGTGAG 1218
> gi|1020158945|ref|NM_001207047.2| Homo sapiens attractin (ATRN),
transcript variant 4, mRNA
Length=3725
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 GGTTAAGGTGAGCT 16
||||||||||||||
Sbjct 2269 GGTTAAGGTGAGCT 2256
> gi|1020158988|ref|NM_139322.3| Homo sapiens attractin (ATRN),
transcript variant 2, mRNA
Length=4108
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 GGTTAAGGTGAGCT 16
||||||||||||||
Sbjct 2652 GGTTAAGGTGAGCT 2639
> gi|1020158886|ref|NM_001323332.1| Homo sapiens attractin (ATRN),
transcript variant 5, mRNA
Length=4339
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 GGTTAAGGTGAGCT 16
||||||||||||||
Sbjct 2652 GGTTAAGGTGAGCT 2639
> gi|197245425|ref|NM_139321.2| Homo sapiens attractin (ATRN),
transcript variant 1, mRNA
Length=8658
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 GGTTAAGGTGAGCT 16
||||||||||||||
Sbjct 2652 GGTTAAGGTGAGCT 2639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2