BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AAATGACGTTTGGATGCTTAAGC (evalue = 10)
Length=23
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034583593|ref|XM_005266216.4| PREDICTED: Homo sapiens cycli... 46.1 5e-05
gi|1034583594|ref|XM_017020317.1| PREDICTED: Homo sapiens cycli... 46.1 5e-05
gi|767977138|ref|XM_011534864.1| PREDICTED: Homo sapiens cyclin... 46.1 5e-05
gi|971460834|ref|NM_001318368.1| Homo sapiens cyclin-dependent ... 46.1 5e-05
gi|971460838|ref|NM_001260.2| Homo sapiens cyclin-dependent kin... 46.1 5e-05
gi|325910844|ref|NM_001204870.1| Homo sapiens WNT1 inducible si... 30.2 3.3
gi|325910846|ref|NR_037944.1| Homo sapiens WNT1 inducible signa... 30.2 3.3
gi|325910842|ref|NM_001204869.1| Homo sapiens WNT1 inducible si... 30.2 3.3
gi|325910841|ref|NM_080838.2| Homo sapiens WNT1 inducible signa... 30.2 3.3
gi|325910840|ref|NM_003882.3| Homo sapiens WNT1 inducible signa... 30.2 3.3
> gi|1034583593|ref|XM_005266216.4| PREDICTED: Homo sapiens cyclin-dependent
kinase 8 (CDK8), transcript variant X1, mRNA
Length=2448
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 AAATGACGTTTGGATGCTTAAGC 23
|||||||||||||||||||||||
Sbjct 134 AAATGACGTTTGGATGCTTAAGC 112
> gi|1034583594|ref|XM_017020317.1| PREDICTED: Homo sapiens cyclin-dependent
kinase 8 (CDK8), transcript variant X2, mRNA
Length=2446
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 AAATGACGTTTGGATGCTTAAGC 23
|||||||||||||||||||||||
Sbjct 132 AAATGACGTTTGGATGCTTAAGC 110
> gi|767977138|ref|XM_011534864.1| PREDICTED: Homo sapiens cyclin-dependent
kinase 8 (CDK8), transcript variant X3, mRNA
Length=3011
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 AAATGACGTTTGGATGCTTAAGC 23
|||||||||||||||||||||||
Sbjct 755 AAATGACGTTTGGATGCTTAAGC 733
> gi|971460834|ref|NM_001318368.1| Homo sapiens cyclin-dependent
kinase 8 (CDK8), transcript variant 2, mRNA
Length=3098
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 AAATGACGTTTGGATGCTTAAGC 23
|||||||||||||||||||||||
Sbjct 776 AAATGACGTTTGGATGCTTAAGC 754
> gi|971460838|ref|NM_001260.2| Homo sapiens cyclin-dependent kinase
8 (CDK8), transcript variant 1, mRNA
Length=3101
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 AAATGACGTTTGGATGCTTAAGC 23
|||||||||||||||||||||||
Sbjct 776 AAATGACGTTTGGATGCTTAAGC 754
> gi|325910844|ref|NM_001204870.1| Homo sapiens WNT1 inducible
signaling pathway protein 1 (WISP1), transcript variant 4, mRNA
Length=4459
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 TTTGGATGCTTAAGC 23
|||||||||||||||
Sbjct 2184 TTTGGATGCTTAAGC 2170
> gi|325910846|ref|NR_037944.1| Homo sapiens WNT1 inducible signaling
pathway protein 1 (WISP1), transcript variant 5, non-coding
RNA
Length=4653
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 TTTGGATGCTTAAGC 23
|||||||||||||||
Sbjct 2378 TTTGGATGCTTAAGC 2364
> gi|325910842|ref|NM_001204869.1| Homo sapiens WNT1 inducible
signaling pathway protein 1 (WISP1), transcript variant 3, mRNA
Length=4739
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 TTTGGATGCTTAAGC 23
|||||||||||||||
Sbjct 2464 TTTGGATGCTTAAGC 2450
> gi|325910841|ref|NM_080838.2| Homo sapiens WNT1 inducible signaling
pathway protein 1 (WISP1), transcript variant 2, mRNA
Length=4933
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 TTTGGATGCTTAAGC 23
|||||||||||||||
Sbjct 2658 TTTGGATGCTTAAGC 2644
> gi|325910840|ref|NM_003882.3| Homo sapiens WNT1 inducible signaling
pathway protein 1 (WISP1), transcript variant 1, mRNA
Length=5194
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 TTTGGATGCTTAAGC 23
|||||||||||||||
Sbjct 2919 TTTGGATGCTTAAGC 2905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4090065595
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2