BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AAAGTATGCTTACTAAAGGTCCTG (evalue = 10)
Length=24
Score E
Sequences producing significant alignments: (Bits) Value
gi|317108154|ref|NM_006571.3| Homo sapiens dynactin subunit 6 (... 48.1 2e-05
gi|520975431|ref|NM_001278628.1| Homo sapiens crooked neck pre-... 34.2 0.24
gi|520975420|ref|NM_016652.5| Homo sapiens crooked neck pre-mRN... 34.2 0.24
gi|520975421|ref|NM_001278625.1| Homo sapiens crooked neck pre-... 34.2 0.24
gi|520975424|ref|NM_001278626.1| Homo sapiens crooked neck pre-... 34.2 0.24
gi|520975429|ref|NM_001278627.1| Homo sapiens crooked neck pre-... 34.2 0.24
gi|1034609160|ref|XM_017027189.1| PREDICTED: Homo sapiens tropo... 30.2 3.7
gi|768003739|ref|XM_011528232.1| PREDICTED: Homo sapiens tropom... 30.2 3.7
gi|1034609162|ref|XM_011528231.2| PREDICTED: Homo sapiens tropo... 30.2 3.7
gi|223555973|ref|NM_003290.2| Homo sapiens tropomyosin 4 (TPM4)... 30.2 3.7
gi|1034609157|ref|XM_017027188.1| PREDICTED: Homo sapiens tropo... 30.2 3.7
gi|223555974|ref|NM_001145160.1| Homo sapiens tropomyosin 4 (TP... 30.2 3.7
gi|1034689975|ref|XR_001735941.1| PREDICTED: Homo sapiens uncha... 30.2 3.7
gi|1034689977|ref|XR_001735943.1| PREDICTED: Homo sapiens uncha... 30.2 3.7
gi|1034689978|ref|XR_001735944.1| PREDICTED: Homo sapiens uncha... 30.2 3.7
gi|1034626290|ref|XR_001754503.1| PREDICTED: Homo sapiens uncha... 30.2 3.7
gi|1034626292|ref|XR_001754506.1| PREDICTED: Homo sapiens uncha... 30.2 3.7
gi|1034626293|ref|XR_001754507.1| PREDICTED: Homo sapiens uncha... 30.2 3.7
> gi|317108154|ref|NM_006571.3| Homo sapiens dynactin subunit 6
(DCTN6), mRNA
Length=1126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 AAAGTATGCTTACTAAAGGTCCTG 24
||||||||||||||||||||||||
Sbjct 1044 AAAGTATGCTTACTAAAGGTCCTG 1021
> gi|520975431|ref|NM_001278628.1| Homo sapiens crooked neck pre-mRNA
splicing factor 1 (CRNKL1), transcript variant 5, mRNA
Length=4048
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 7 TGCTTACTAAAGGTCCT 23
|||||||||||||||||
Sbjct 3518 TGCTTACTAAAGGTCCT 3502
> gi|520975420|ref|NM_016652.5| Homo sapiens crooked neck pre-mRNA
splicing factor 1 (CRNKL1), transcript variant 1, mRNA
Length=4413
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 7 TGCTTACTAAAGGTCCT 23
|||||||||||||||||
Sbjct 3883 TGCTTACTAAAGGTCCT 3867
> gi|520975421|ref|NM_001278625.1| Homo sapiens crooked neck pre-mRNA
splicing factor 1 (CRNKL1), transcript variant 2, mRNA
Length=4377
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 7 TGCTTACTAAAGGTCCT 23
|||||||||||||||||
Sbjct 3847 TGCTTACTAAAGGTCCT 3831
> gi|520975424|ref|NM_001278626.1| Homo sapiens crooked neck pre-mRNA
splicing factor 1 (CRNKL1), transcript variant 3, mRNA
Length=4190
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 7 TGCTTACTAAAGGTCCT 23
|||||||||||||||||
Sbjct 3660 TGCTTACTAAAGGTCCT 3644
> gi|520975429|ref|NM_001278627.1| Homo sapiens crooked neck pre-mRNA
splicing factor 1 (CRNKL1), transcript variant 4, mRNA
Length=4100
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 7 TGCTTACTAAAGGTCCT 23
|||||||||||||||||
Sbjct 3570 TGCTTACTAAAGGTCCT 3554
> gi|1034609160|ref|XM_017027189.1| PREDICTED: Homo sapiens tropomyosin
4 (TPM4), transcript variant X4, mRNA
Length=4492
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 AAAGTATGCTTACTA 15
|||||||||||||||
Sbjct 3127 AAAGTATGCTTACTA 3113
> gi|768003739|ref|XM_011528232.1| PREDICTED: Homo sapiens tropomyosin
4 (TPM4), transcript variant X6, mRNA
Length=3865
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 AAAGTATGCTTACTA 15
|||||||||||||||
Sbjct 2494 AAAGTATGCTTACTA 2480
> gi|1034609162|ref|XM_011528231.2| PREDICTED: Homo sapiens tropomyosin
4 (TPM4), transcript variant X5, mRNA
Length=2539
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 AAAGTATGCTTACTA 15
|||||||||||||||
Sbjct 1174 AAAGTATGCTTACTA 1160
> gi|223555973|ref|NM_003290.2| Homo sapiens tropomyosin 4 (TPM4),
transcript variant Tpm4.2, mRNA
Length=2645
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 AAAGTATGCTTACTA 15
|||||||||||||||
Sbjct 1276 AAAGTATGCTTACTA 1262
> gi|1034609157|ref|XM_017027188.1| PREDICTED: Homo sapiens tropomyosin
4 (TPM4), transcript variant X2, mRNA
Length=2657
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 AAAGTATGCTTACTA 15
|||||||||||||||
Sbjct 1292 AAAGTATGCTTACTA 1278
> gi|223555974|ref|NM_001145160.1| Homo sapiens tropomyosin 4 (TPM4),
transcript variant Tpm4.1, mRNA
Length=2630
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 AAAGTATGCTTACTA 15
|||||||||||||||
Sbjct 1261 AAAGTATGCTTACTA 1247
> gi|1034689975|ref|XR_001735941.1| PREDICTED: Homo sapiens uncharacterized
LOC105372546 (LOC105372546), transcript variant
X1, ncRNA
Length=6248
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 5 TATGCTTACTAAAGGTCCT 23
|||| ||||||||||||||
Sbjct 5491 TATGATTACTAAAGGTCCT 5509
> gi|1034689977|ref|XR_001735943.1| PREDICTED: Homo sapiens uncharacterized
LOC105372546 (LOC105372546), transcript variant
X3, ncRNA
Length=4701
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 5 TATGCTTACTAAAGGTCCT 23
|||| ||||||||||||||
Sbjct 3944 TATGATTACTAAAGGTCCT 3962
> gi|1034689978|ref|XR_001735944.1| PREDICTED: Homo sapiens uncharacterized
LOC105372546 (LOC105372546), transcript variant
X4, ncRNA
Length=6085
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 5 TATGCTTACTAAAGGTCCT 23
|||| ||||||||||||||
Sbjct 5328 TATGATTACTAAAGGTCCT 5346
> gi|1034626290|ref|XR_001754503.1| PREDICTED: Homo sapiens uncharacterized
LOC105372546 (LOC105372546), transcript variant
X1, ncRNA
Length=6248
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 5 TATGCTTACTAAAGGTCCT 23
|||| ||||||||||||||
Sbjct 5491 TATGATTACTAAAGGTCCT 5509
> gi|1034626292|ref|XR_001754506.1| PREDICTED: Homo sapiens uncharacterized
LOC105372546 (LOC105372546), transcript variant
X3, ncRNA
Length=4701
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 5 TATGCTTACTAAAGGTCCT 23
|||| ||||||||||||||
Sbjct 3944 TATGATTACTAAAGGTCCT 3962
> gi|1034626293|ref|XR_001754507.1| PREDICTED: Homo sapiens uncharacterized
LOC105372546 (LOC105372546), transcript variant
X4, ncRNA
Length=6085
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 5 TATGCTTACTAAAGGTCCT 23
|||| ||||||||||||||
Sbjct 5328 TATGATTACTAAAGGTCCT 5346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4674360680
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2