BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AAAGGGTGTAACGCAACTA (evalue = 10)
Length=19
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034689602|ref|XM_017012144.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034689604|ref|XM_017012145.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034689606|ref|XM_017012146.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|168480144|ref|NM_001101.3| Homo sapiens actin, beta (ACTB), ... 38.2 0.006
gi|1034614130|ref|XM_017004160.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|134133225|ref|NM_001083538.1| Homo sapiens POTE ankyrin doma... 38.2 0.006
gi|1034614129|ref|XM_011511216.2| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034614127|ref|XM_017004159.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034614132|ref|XM_017004161.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034616020|ref|XM_017004743.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034616018|ref|XM_017004742.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|459352729|ref|NM_001277083.1| Homo sapiens POTE ankyrin doma... 38.2 0.006
gi|1034616015|ref|XM_011511683.2| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034616016|ref|XM_017004741.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034615986|ref|XM_017004734.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034615984|ref|XM_017004733.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034615981|ref|XM_011511670.2| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034615982|ref|XM_017004732.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034615988|ref|XM_017004735.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034616317|ref|XM_017004835.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034616315|ref|XM_017004834.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|1034616313|ref|XM_017004833.1| PREDICTED: Homo sapiens POTE ... 38.2 0.006
gi|256222517|ref|NM_001099771.2| Homo sapiens POTE ankyrin doma... 38.2 0.006
gi|224282146|ref|NM_001145442.1| Homo sapiens POTE ankyrin doma... 30.2 1.4
> gi|1034689602|ref|XM_017012144.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X6, mRNA
Length=2583
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 2044 AAAGGGTGTAACGCAACTA 2026
> gi|1034689604|ref|XM_017012145.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X4, mRNA
Length=2672
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 2133 AAAGGGTGTAACGCAACTA 2115
> gi|1034689606|ref|XM_017012146.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X5, mRNA
Length=1584
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 1045 AAAGGGTGTAACGCAACTA 1027
> gi|168480144|ref|NM_001101.3| Homo sapiens actin, beta (ACTB),
mRNA
Length=1852
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 1244 AAAGGGTGTAACGCAACTA 1226
> gi|1034614130|ref|XM_017004160.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X3, mRNA
Length=2574
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 2035 AAAGGGTGTAACGCAACTA 2017
> gi|134133225|ref|NM_001083538.1| Homo sapiens POTE ankyrin domain
family member E (POTEE), mRNA
Length=3440
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3312 AAAGGGTGTAACGCAACTA 3294
> gi|1034614129|ref|XM_011511216.2| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X2, mRNA
Length=3575
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3036 AAAGGGTGTAACGCAACTA 3018
> gi|1034614127|ref|XM_017004159.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X1, mRNA
Length=3606
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3067 AAAGGGTGTAACGCAACTA 3049
> gi|1034614132|ref|XM_017004161.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X4, mRNA
Length=4288
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3749 AAAGGGTGTAACGCAACTA 3731
> gi|1034616020|ref|XM_017004743.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X4, mRNA
Length=2628
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 2089 AAAGGGTGTAACGCAACTA 2071
> gi|1034616018|ref|XM_017004742.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X3, mRNA
Length=2696
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 2157 AAAGGGTGTAACGCAACTA 2139
> gi|459352729|ref|NM_001277083.1| Homo sapiens POTE ankyrin domain
family member J (POTEJ), mRNA
Length=3277
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3149 AAAGGGTGTAACGCAACTA 3131
> gi|1034616015|ref|XM_011511683.2| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X1, mRNA
Length=3860
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3321 AAAGGGTGTAACGCAACTA 3303
> gi|1034616016|ref|XM_017004741.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X2, mRNA
Length=3833
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3294 AAAGGGTGTAACGCAACTA 3276
> gi|1034615986|ref|XM_017004734.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X4, mRNA
Length=2633
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 2094 AAAGGGTGTAACGCAACTA 2076
> gi|1034615984|ref|XM_017004733.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X3, mRNA
Length=2696
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 2157 AAAGGGTGTAACGCAACTA 2139
> gi|1034615981|ref|XM_011511670.2| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X1, mRNA
Length=3971
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3432 AAAGGGTGTAACGCAACTA 3414
> gi|1034615982|ref|XM_017004732.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X2, mRNA
Length=3950
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3411 AAAGGGTGTAACGCAACTA 3393
> gi|1034615988|ref|XM_017004735.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X5, mRNA
Length=1593
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 1054 AAAGGGTGTAACGCAACTA 1036
> gi|1034616317|ref|XM_017004835.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member F (POTEF), transcript variant
X3, mRNA
Length=2633
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 2094 AAAGGGTGTAACGCAACTA 2076
> gi|1034616315|ref|XM_017004834.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member F (POTEF), transcript variant
X2, mRNA
Length=2696
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 2157 AAAGGGTGTAACGCAACTA 2139
> gi|1034616313|ref|XM_017004833.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member F (POTEF), transcript variant
X1, mRNA
Length=3974
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3435 AAAGGGTGTAACGCAACTA 3417
> gi|256222517|ref|NM_001099771.2| Homo sapiens POTE ankyrin domain
family member F (POTEF), mRNA
Length=4337
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
|||||||||||||||||||
Sbjct 3660 AAAGGGTGTAACGCAACTA 3642
> gi|224282146|ref|NM_001145442.1| Homo sapiens POTE ankyrin domain
family member M (POTEM), mRNA
Length=6666
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAGGGTGTAACGCAACTA 19
||||||||||| |||||||
Sbjct 2941 AAAGGGTGTAATGCAACTA 2923
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1752885255
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2