BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AAAACGGAATGCATCTGGAC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|296010846|ref|NM_133436.3| Homo sapiens asparagine synthetas... 40.1 0.002
gi|296010845|ref|NM_183356.3| Homo sapiens asparagine synthetas... 40.1 0.002
gi|296010844|ref|NM_001673.4| Homo sapiens asparagine synthetas... 40.1 0.002
gi|296010847|ref|NM_001178075.1| Homo sapiens asparagine synthe... 40.1 0.002
gi|312839846|ref|NR_037597.1| Homo sapiens uncharacterized LOC4... 32.2 0.47
gi|1034654044|ref|XM_011515115.2| PREDICTED: Homo sapiens FK506... 30.2 1.9
gi|298231251|ref|NM_021946.4| Homo sapiens BCL6 corepressor-lik... 28.2 7.3
gi|821055458|ref|NM_001184772.2| Homo sapiens BCL6 corepressor-... 28.2 7.3
gi|1034674918|ref|XM_017029722.1| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|1034674921|ref|XM_005262455.4| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|1034674920|ref|XM_005262454.3| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|1034674923|ref|XM_006724779.2| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|1034674917|ref|XM_006724776.3| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|1034674924|ref|XM_005262456.4| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|1034674913|ref|XM_005262452.4| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|1034674914|ref|XM_017029721.1| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|1034674922|ref|XM_006724777.3| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|1034674916|ref|XM_005262453.4| PREDICTED: Homo sapiens BCL6 ... 28.2 7.3
gi|311771773|ref|NM_176871.3| Homo sapiens PDZ and LIM domain 2... 28.2 7.3
> gi|296010846|ref|NM_133436.3| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 1, mRNA
Length=2339
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AAAACGGAATGCATCTGGAC 20
||||||||||||||||||||
Sbjct 608 AAAACGGAATGCATCTGGAC 589
> gi|296010845|ref|NM_183356.3| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 3, mRNA
Length=2362
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AAAACGGAATGCATCTGGAC 20
||||||||||||||||||||
Sbjct 631 AAAACGGAATGCATCTGGAC 612
> gi|296010844|ref|NM_001673.4| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 2, mRNA
Length=2084
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AAAACGGAATGCATCTGGAC 20
||||||||||||||||||||
Sbjct 353 AAAACGGAATGCATCTGGAC 334
> gi|296010847|ref|NM_001178075.1| Homo sapiens asparagine synthetase
(glutamine-hydrolyzing) (ASNS), transcript variant 4,
mRNA
Length=2010
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AAAACGGAATGCATCTGGAC 20
||||||||||||||||||||
Sbjct 279 AAAACGGAATGCATCTGGAC 260
> gi|312839846|ref|NR_037597.1| Homo sapiens uncharacterized LOC442028
(LOC442028), long non-coding RNA
Length=3330
Score = 32.2 bits (16), Expect = 0.47
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AAAACGGAATGCATCTGGAC 20
||||| ||||||||||||||
Sbjct 601 AAAACAGAATGCATCTGGAC 582
> gi|1034654044|ref|XM_011515115.2| PREDICTED: Homo sapiens FK506
binding protein 9 (FKBP9), transcript variant X1, mRNA
Length=3277
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 1 AAAACGGAATGCATCTGGA 19
|||| ||||||||||||||
Sbjct 1588 AAAAGGGAATGCATCTGGA 1570
> gi|298231251|ref|NM_021946.4| Homo sapiens BCL6 corepressor-like
1 (BCORL1), transcript variant 1, mRNA
Length=7127
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 708 GGAATGCATCTGGA 695
> gi|821055458|ref|NM_001184772.2| Homo sapiens BCL6 corepressor-like
1 (BCORL1), transcript variant 1a, mRNA
Length=7349
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 708 GGAATGCATCTGGA 695
> gi|1034674918|ref|XM_017029722.1| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X5, mRNA
Length=7848
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 1209 GGAATGCATCTGGA 1196
> gi|1034674921|ref|XM_005262455.4| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X7, mRNA
Length=7418
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 779 GGAATGCATCTGGA 766
> gi|1034674920|ref|XM_005262454.3| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X6, mRNA
Length=7475
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 836 GGAATGCATCTGGA 823
> gi|1034674923|ref|XM_006724779.2| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X9, mRNA
Length=7634
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 995 GGAATGCATCTGGA 982
> gi|1034674917|ref|XM_006724776.3| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X4, mRNA
Length=7548
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 909 GGAATGCATCTGGA 896
> gi|1034674924|ref|XM_005262456.4| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X10, mRNA
Length=7373
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 1124 GGAATGCATCTGGA 1111
> gi|1034674913|ref|XM_005262452.4| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X1, mRNA
Length=7763
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 1124 GGAATGCATCTGGA 1111
> gi|1034674914|ref|XM_017029721.1| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X2, mRNA
Length=7794
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 1155 GGAATGCATCTGGA 1142
> gi|1034674922|ref|XM_006724777.3| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X8, mRNA
Length=7443
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 804 GGAATGCATCTGGA 791
> gi|1034674916|ref|XM_005262453.4| PREDICTED: Homo sapiens BCL6
corepressor-like 1 (BCORL1), transcript variant X3, mRNA
Length=7531
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 892 GGAATGCATCTGGA 879
> gi|311771773|ref|NM_176871.3| Homo sapiens PDZ and LIM domain
2 (PDLIM2), transcript variant 1, mRNA
Length=4608
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 GGAATGCATCTGGA 19
||||||||||||||
Sbjct 4164 GGAATGCATCTGGA 4151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2